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1.
Mar Drugs ; 22(4)2024 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-38667792

RESUMEN

Ulcerative colitis (UC) is a kind of inflammatory bowel condition characterized by inflammation within the mucous membrane, rectal bleeding, diarrhea, and pain experienced in the abdominal region. Existing medications for UC have limited treatment efficacy and primarily focus on symptom relief. Limonium bicolor (LB), an aquatic traditional Chinese medicine (TCM), exerts multi-targeted therapeutic effects with few side effects and is used to treat anemia and hemostasis. Nevertheless, the impact of LB on UC and its mechanism of action remain unclear. Therefore, the objective of this study was to investigate the anti-inflammatory effects and mechanism of action of ethanol extract of LB (LBE) in lipopolysaccharide-induced RAW 264.7 macrophages and dextran sulfate sodium (DSS)-induced UC. The results showed that LBE suppressed the secretion of cytokines in LPS-stimulated RAW 264.7 cells in a dose-dependent manner. LBE had protective effects against DSS-induced colitis in mice, decreased the disease activity index (DAI) score, alleviated symptoms, increased colon length, and improved histological characteristics, thus having protective effects against DSS-induced colitis in mice. In addition, it reversed disturbances in the abundance of proteobacteria and probiotics such as Lactobacillus and Blautia in mice with DSS-induced UC. Based on the results of network pharmacology analysis, we identified four main compounds in LBE that are associated with five inflammatory genes (Ptgs2, Plg, Ppar-γ, F2, and Gpr35). These results improve comprehension of the biological activity and functionality of LB and may facilitate the development of LB-based compounds for the treatment of UC.


Asunto(s)
Colitis Ulcerosa , Sulfato de Dextran , Disbiosis , Etanol , Microbioma Gastrointestinal , Plumbaginaceae , Animales , Colitis Ulcerosa/tratamiento farmacológico , Colitis Ulcerosa/inducido químicamente , Ratones , Células RAW 264.7 , Microbioma Gastrointestinal/efectos de los fármacos , Disbiosis/tratamiento farmacológico , Plumbaginaceae/química , Etanol/química , Masculino , Antiinflamatorios/farmacología , Modelos Animales de Enfermedad , Citocinas/metabolismo , Inflamación/tratamiento farmacológico , Lipopolisacáridos , Ratones Endogámicos C57BL , Colon/efectos de los fármacos , Colon/patología , Colon/metabolismo
2.
Neurobiol Stress ; 30: 100622, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38533483

RESUMEN

Stress is a crucial factor affecting social decision-making. However, its impacts on the behavioral and neural processes of females' unfairness decision-making remain unclear. Combining computational modeling and functional near-infrared spectroscopy (fNIRS), this study attempted to illuminate the neurocomputational signature of unfairness decision-making in females. We also considered the effect of trait stress coping styles. Forty-four healthy young females (20.98 ± 2.89 years) were randomly assigned to the stress group (n = 21) and the control group (n = 23). Acute psychosocial stress was induced by the Trier Social Stress Test (TSST), and participants then completed the one-shot ultimatum game (UG) as responders. The results showed that acute psychosocial stress reduced the adaptability to fairness and lead to more random decision-making responses. Moreover, in the stress group, a high level of negative coping style predicted more deterministic decision. fNIRS results showed that stress led to an increase of oxy-hemoglobin (HbO) peak in the right temporoparietal junction (rTPJ), while decreased the activation of left middle temporal gyrus (lMTG) when presented the moderately unfair (MU) offers. This signified more involvement of the mentalization and the inhibition of moral processing. Moreover, individuals with higher negative coping scores showed more deterministic decision behaviors under stress. Taken together, our study emphasizes the role of acute psychosocial stress in affecting females' unfairness decision-making mechanisms in social interactions, and provides evidences for the "tend and befriend" pattern based on a cognitive neuroscience perspec.

3.
Food Funct ; 14(14): 6582-6595, 2023 Jul 17.
Artículo en Inglés | MEDLINE | ID: mdl-37395069

RESUMEN

A polysaccharide fraction named ATFP was isolated and purified from Allium tenuissimum L. flowers. Its primary structure and therapeutic effects on mice with acute ulcerative colitis were investigated in the present study. The results showed that the molecular weight of ATFP was determined to be 1.56 × 106 Da without nucleic acids and protein. Moreover, ATFP was a pyranose type acidic polysaccharide containing α and ß type glycosidic bonds and consisted of Ara, Gal, Glc, Xyl, GlcA and Glca with molar percentages of 14.55 : 49.46 : 7.28 : 23.23 : 2.49 : 3.01. Microscopic observation revealed that ATFP had a smooth lamellar structure with pores and multiple molecular chains were intertwined. In animal experiments of dextran sodium sulfate-induced acute ulcerative colitis, the results indicated that ATFP significantly improved the symptom of weight loss, decreased the disease activity index and alleviated pathological damage. The anti-inflammatory mechanism of ATFP might be related to the inhibition of the TLR4/MyD88/NF-κB signaling pathway to regulate the level of inflammatory cytokines. In particular, ATFP also played an important role in regulating the structure of gut microbiota, which was specifically reflected in promoting the abundance of short-chain fatty acid producing bacteria. Overall, ATFP showed a significant mitigating effect against ulcerative colitis in mice, and it is expected to prove its value efficiently in the field of functional food.


Asunto(s)
Allium , Colitis Ulcerosa , Colitis , Microbioma Gastrointestinal , Animales , Ratones , Colitis Ulcerosa/inducido químicamente , Colitis Ulcerosa/tratamiento farmacológico , Transducción de Señal , FN-kappa B/genética , Flores , Sulfato de Dextran , Modelos Animales de Enfermedad , Colon , Ratones Endogámicos C57BL
4.
Anal Chem ; 95(28): 10588-10594, 2023 07 18.
Artículo en Inglés | MEDLINE | ID: mdl-37402148

RESUMEN

N6-Methyladenosine (m6A) is one of the most abundant and prevalent natural modifications occurring in diverse RNA species. m6A plays a wide range of roles in physiological and pathological processes. Revealing the functions of m6A relies on the faithful detection of individual m6A sites in RNA. However, developing a simple method for the single-base resolution detection of m6A is still a challenging task. Herein, we report an adenosine deamination sequencing (AD-seq) technique for the facile detection of m6A in RNA at single-base resolution. The AD-seq approach capitalizes on the selective deamination of adenosine, but not m6A, by the evolved tRNA adenosine deaminase (TadA) variant of TadA8e or the dimer protein of TadA-TadA8e. In AD-seq, adenosine is deaminated by TadA8e or TadA-TadA8e to form inosine, which pairs with cytidine and is read as guanosine in sequencing. m6A resists deamination due to the interference of the methyl group at the N6 position of adenosine. Thus, the m6A base pairs with thymine and is still read as adenosine in sequencing. The differential readouts from A and m6A in sequencing can achieve the single-base resolution detection of m6A in RNA. Application of the proposed AD-seq successfully identified individual m6A sites in Escherichia coli 23S rRNA. Taken together, the proposed AD-seq allows simple and cost-effective detection of m6A at single-base resolution in RNA, which provides a valuable tool to decipher the functions of m6A in RNA.


Asunto(s)
ARN de Transferencia , ARN , ARN/metabolismo , Desaminación , ARN de Transferencia/metabolismo , Adenosina/metabolismo , Adenosina Desaminasa/metabolismo
5.
J Ethnopharmacol ; 317: 116747, 2023 Dec 05.
Artículo en Inglés | MEDLINE | ID: mdl-37311500

RESUMEN

ETHNOPHARMACOLOGICAL RELEVANCE: Ramulus Cinnamomi, the dried twig of Cinnamomum cassia (L.) J.Presl., is a traditional Chinese medicine (TCM) with anti-inflammatory effects. The medicinal functions of Ramulus Cinnamomi essential oil (RCEO) have been confirmed, although the potential mechanisms by which RCEO exerts its anti-inflammatory effects have not been fully elucidated. AIM OF THE STUDY: To investigate whether N-acylethanolamine acid amidase (NAAA) mediates the anti-inflammatory effects of RCEO. MATERIALS AND METHODS: RCEO was extracted by steam distillation of Ramulus Cinnamomi, and NAAA activity was detected using HEK293 cells overexpressing NAAA. N-Palmitoylethanolamide (PEA) and N-oleoylethanolamide (OEA), both of which are NAAA endogenous substrates, were detected by liquid chromatography with tandem mass spectrometry (HPLC-MS/MS). The anti-inflammatory effects of RCEO were analyzed in lipopolysaccharide (LPS)-stimulated RAW264.7 cells, and the cell viability was measured with a Cell Counting Kit-8 (CCK-8) kit. The nitric oxide (NO) in the cell supernatant was measured using the Griess method. The level of tumor necrosis factor-α (TNF-α) in the RAW264.7 cell supernatant was determined using an enzyme-linked immunosorbent assay (ELISA) kit. The chemical composition of RCEO was assessed by gas chromatography-mass spectroscopy (GC-MS). The molecular docking study for (E)-cinnamaldehyde and NAAA was performed by using Discovery Studio 2019 software (DS2019). RESULTS: We established a cell model for evaluating NAAA activity, and we found that RCEO inhibited the NAAA activity with an IC50 of 5.64 ± 0.62 µg/mL. RCEO significantly elevated PEA and OEA levels in NAAA-overexpressing HEK293 cells, suggesting that RCEO might prevent the degradation of cellular PEA and OEA by inhibiting the NAAA activity in NAAA-overexpressing HEK293 cells. In addition, RCEO also decreased NO and TNF-α cytokines in lipopolysaccharide (LPS)-stimulated macrophages. Interestingly, the GC-MS assay revealed that more than 93 components were identified in RCEO, of which (E)-cinnamaldehyde accounted for 64.88%. Further experiments showed that (E)-cinnamaldehyde and O-methoxycinnamaldehyde inhibited NAAA activity with an IC50 of 3.21 ± 0.03 and 9.62 ± 0.30 µg/mL, respectively, which may represent key components of RCEO that inhibit NAAA activity. Meanwhile, docking assays revealed that (E)-cinnamaldehyde occupies the catalytic cavity of NAAA and engages in a hydrogen bond interaction with the TRP181 and hydrophobic-related interactions with LEU152 of human NAAA. CONCLUSIONS: RCEO showed anti-inflammatory effects by inhibiting NAAA activity and elevating cellular PEA and OEA levels in NAAA-overexpressing HEK293 cells. (E)-cinnamaldehyde and O-methoxycinnamaldehyde, two components in RCEO, were identified as the main contributors of the anti-inflammatory effects of RCEO by modulating cellular PEA levels through NAAA inhibition.


Asunto(s)
Lipopolisacáridos , Aceites Volátiles , Humanos , Lipopolisacáridos/farmacología , Factor de Necrosis Tumoral alfa , Aceites Volátiles/farmacología , Espectrometría de Masas en Tándem , Células HEK293 , Simulación del Acoplamiento Molecular , Antiinflamatorios/farmacología , Amidohidrolasas/metabolismo
6.
Anal Chem ; 95(21): 8384-8392, 2023 05 30.
Artículo en Inglés | MEDLINE | ID: mdl-37192336

RESUMEN

Chemical modifications in DNA have profound influences on the structures and functions of DNA. Uracil, a naturally occurring DNA modification, can originate from the deamination of cytosine or arise from misincorporation of dUTP into DNA during DNA replication. Uracil in DNA will imperil genomic stability due to their potential in producing detrimental mutations. An in-depth understanding of the functions of uracil modification requires the accurate determination of its site as well as content in genomes. Herein, we characterized that a new member of the uracil-DNA glycosylase (UDG) family enzyme (UdgX-H109S) could selectively cleave both uracil-containing single-stranded DNA (ssDNA) and double-stranded DNA (dsDNA). Based on this unique property of UdgX-H109S, we developed an enzymatic cleavage-mediated extension stalling (ECES) method for the locus-specific detection and quantification of uracil in genomic DNA. In the ECES method, UdgX-H109S specifically recognizes and cleaves the N-glycosidic bond of uracil from dsDNA and generates an apurinic/apyrimidinic (AP) site, which could be broken by APE1 to form a one-nucleotide gap. The specific cleavage by UdgX-H109S is then evaluated and quantified by qPCR. With the developed ECES approach, we demonstrated that the level of uracil at position Chr4:50566961 in genomic DNA of breast cancer tissues was significantly decreased. Collectively, the ECES method has been proved to be accurate and reproducible in the locus-specific quantification of uracil in genomic DNA from biological and clinical samples.


Asunto(s)
ADN , Uracilo , Uracilo/química , ADN/genética , ADN/química , Uracil-ADN Glicosidasa/metabolismo , Nucleótidos , ADN de Cadena Simple
7.
Phys Chem Chem Phys ; 25(6): 5095-5106, 2023 Feb 08.
Artículo en Inglés | MEDLINE | ID: mdl-36722998

RESUMEN

Multi-metallic catalysts containing Pt species are widely used. As there is no methodology to evaluate the quantity of active surface sites of Pt or other metal species, researchers have only published the total conversion or selectivity of all active surface sites. This study focuses on Pt-Pd bimetallic catalysts and uses both methane reaction kinetics and infrared (IR) spectroscopy to characterize the surface Pd and Pt sites. The surface Pt sites, which were determined from the fitted rate coefficients, were evaluated in the reaction region where the catalyst structure was insensitive to catalytic performance. Another methodology involves IR spectroscopy to normalize the active surface sites. As three typical absorption bands of Pt species were observed during CO chemisorption, spectral deconvolution was conducted to obtain the integrated intensity of the Pd and Pt species, and the quantity of surface Pd and Pt sites was calculated. The two methods have good consistency, and the IR spectra are considered to be more suitable for calculating the quantity of active surface sites. In addition, the IR spectra revealed a correlation between oxidative Pd surface sites and methane reactivity. The ionic Pd sites provide abundant oxygen intermediates in the catalytic reaction and improve the catalytic performance. As for the surface Pd species and bulk Pd species, the XPS results indicate a similar variation in the Pdδ+/(Pdδ+ + Pd0) ratio vs. Pd/Pt ratio.

8.
Br J Pharmacol ; 180(13): 1690-1709, 2023 07.
Artículo en Inglés | MEDLINE | ID: mdl-36692417

RESUMEN

BACKGROUND AND PURPOSE: Liver failure is associated with psychiatric alterations, partly resulting from the increased brain dopamine levels. We investigated the relationship between increased dopamine levels and mental abnormalities using bile duct ligation (BDL) rats and the mechanism by which liver failure increased dopamine levels in SH-SY5Y cells. Behavioural tests were carried out on day 13 and 27 following BDL, along with measurements of dopamine and metabolites, expressions of enzymes and transporters related to dopamine metabolism, and its transport into the cortex and the hippocampus. SH-SY5Y cells were used to investigate whether NH4 Cl, bile acids and bilirubin affected expression of tyrosine hydroxylase or not. Tyrosine hydroxylase (TH) expression in SH-SY5Y cells co-incubated with bilirubin and signal pathway inhibitors was measured. KEY RESULTS: Open-field test results demonstrated BDL rats showed anxiety-like behaviour, accompanied by increased dopamine levels and expression of TH protein in the cortex. Membrane bound long form (MB)-COMT, slightly but significantly decreased. SH-SY5Y cells indicated that increased bilirubin levels was a factor in inducing TH expression. Both inhibitor of NF-κB pathway BAY 11-7082 and silencing NF-κB p65 reversed bilirubin-induced upregulation of TH protein. NF-κB activator TNF-α increased expression of TH protein. Roles of bilirubin in increases of TH protein expressions and dopamine levels were measured using hyperbilirubinemia rats. Anxiety-like behaviour, was associated with increased dopamine levels and TH protein expressions in hyperbilirubinemia rats. CONCLUSION AND IMPLICATIONS: BDL significantly increased dopamine levels in rat cortex partly due to bilirubin-mediated TH induction. Increased bilirubin induced TH expression via activating NF-κB signalling pathway.


Asunto(s)
Fallo Hepático , Neuroblastoma , Ratas , Humanos , Animales , Tirosina 3-Monooxigenasa/metabolismo , Dopamina/metabolismo , FN-kappa B/metabolismo , Neuroblastoma/metabolismo , Conductos Biliares/cirugía , Fallo Hepático/metabolismo , Hiperbilirrubinemia/metabolismo , Bilirrubina/metabolismo , Bilirrubina/farmacología , Ligadura , Corteza Cerebral/metabolismo , Hígado/metabolismo
9.
Vet Sci ; 10(1)2023 Jan 16.
Artículo en Inglés | MEDLINE | ID: mdl-36669064

RESUMEN

Porcine reproductive and respiratory syndrome virus (PRRSV) is a significant threat to the pig industry in China. However, the epidemiological characteristics of PRRSV after the outbreak of African swine fever in China were not thoroughly investigated. In the present study, the serological and epidemiological investigations of PRRSV in pigs from the Hunan and Hebei provinces of China were assessed. The results showed that 73.12% (95% CI 71.74-74.49) of pigs were positive for PRRSV-special antibody by enzyme-linked immunosorbent assay. Out of 5799 samples, 482 (8.31%, 95% CI 7.60-9.02) samples were positive for PRRSV nucleic acids. The positive rates of PRRSV in healthy pigs from farms and slaughterhouses were 2.27% (47/2072) and 7.70% (217/2818), which were lower than that in diseased pigs (23.98%, 218/909). Furthermore, the full-length OFR5 gene sequences of 43 PRRSV strains were sequenced and analysed. Phylogenetic analysis revealed that 43 isolates were classified into three lineages, namely lineage 1 (n = 24), lineage 8 (n = 15), and lineage 3 (n = 4). Lineage 1 could be further divided into sublineage 1.5 (n = 2) and sublineage 1.8 (n = 22), and lineage 8 was classified into sublineage 8.1 (n = 3) and sublineage 8.7 (n = 12). Collectively, our findings revealed the severe prevalence of PRRSV in the Hunan and Hebei provinces, where sublineage 1.8 and sublineage 8.7 predominated. The present study provides the update information of the epidemiological and genetic characteristics of PRRSV in the investigated regions, which will be beneficial for PRRS control.

10.
Anal Chem ; 95(2): 1556-1565, 2023 01 17.
Artículo en Inglés | MEDLINE | ID: mdl-36563112

RESUMEN

DNA methylation (5-methylcytosine, 5mC) is the most important epigenetic modification in mammals. Deciphering the roles of 5mC relies on the quantitative detection of 5mC at the single-base resolution. Bisulfite sequencing (BS-seq) is the most often employed technique for mapping 5mC in DNA. However, bisulfite treatment may cause serious degradation of input DNA due to the harsh reaction conditions. Here, we engineered the human apolipoprotein B mRNA-editing catalytic polypeptide-like 3C (A3C) protein to endow the engineered A3C (eA3C) protein with differential deamination activity toward cytosine and 5mC. By the virtue of the unique property of eA3C, we proposed an engineered A3C sequencing (EAC-seq) method for the bisulfite-free and quantitative mapping of 5mC in DNA at the single-base resolution. In EAC-seq, the eA3C protein can deaminate C but not 5mC, which is employed to differentiate C and 5mC in sequencing. Using the EAC-seq method, we quantitatively detected 5mC in genomic DNA of lung cancer tissue. In contrast to the harsh reaction conditions of BS-seq, which could lead to significant degradation of DNA, the whole procedure of EAC-seq is carried out under mild conditions, thereby preventing DNA damage. Taken together, the EAC-seq approach is bisulfite-free and straightforward, making it an invaluable tool for the quantitative detection of 5mC in limited DNA at the single-base resolution.


Asunto(s)
5-Metilcitosina , Citidina Desaminasa , Metilación de ADN , Humanos , 5-Metilcitosina/metabolismo , Citidina Desaminasa/genética , Citidina Desaminasa/metabolismo , Citosina , ADN/genética , ADN/metabolismo , Epigénesis Genética , Análisis de Secuencia de ADN/métodos , Sulfitos/metabolismo
11.
J Appl Psychol ; 108(1): 114-137, 2023 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-35901409

RESUMEN

Humans are a fundamentally social species, having evolved in groups with status hierarchies. However, research on the dimensions of individual ability has largely overlooked the domain of status. Building upon research on the individual-level benefits of accurate status perceptions, we propose that there exists an individual dispositional ability to perceive groups' informal status hierarchies, which we call status acuity, and which has important implications for group dynamics. We find support for the existence and importance of status acuity across several studies. In Studies 1a and 1b, we develop and validate a measure of status acuity, find that it is distinct from previously studied individual abilities including emotional intelligence, cognitive intelligence, and accurate learning of social networks, and find that it predicts important individual outcomes at work. In Studies 2 and 3, we examine the effects of status acuity in face-to-face groups. As predicted, groups whose members have higher status acuity experience less status conflict, which benefits performance on creative idea-generation as well as problem-solving tasks. This work extends existing research on status and group dynamics, and contributes to our understanding of the constellation of human abilities, offering a new answer to the question: "How well does this person work in groups?" (PsycInfo Database Record (c) 2023 APA, all rights reserved).


Asunto(s)
Dinámica de Grupo , Solución de Problemas , Humanos , Inteligencia Emocional
12.
Microb Ecol ; 86(1): 509-520, 2023 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-35918440

RESUMEN

Denitrifying nitrous oxide (N2O) emissions in agroecosystems result from variations in microbial composition and soil properties. However, the microbial mechanisms of differential N2O emissions in agricultural soils are less understood. In this study, microcosm experiments using two main types of Chinese cropland soil were conducted with different supplements of nitrate and glucose to simulate the varying nitrogen and carbon conditions. The results show that N2O accumulation in black soil (BF) was significantly higher than that in fluvo-aquic soil (FF) independent of nitrogen and carbon. The abundance of most denitrifying genes was significantly higher in FF, but the ratios of genes responsible for N2O production (nirS and nirK) to the gene responsible for N2O reduction (nosZ) did not significantly differ between the two soils. However, the soils showed obvious discrepancies in denitrifying bacterial communities, with a higher abundance of N2O-generating bacteria in BF and a higher abundance of N2O-reducing bacteria in FF. High accumulation of N2O was verified by the bacterial isolates of Rhodanobacter predominated in BF due to a lack of N2O reduction capacity. The dominance of Castellaniella and others in FF led to a rapid reduction in N2O and thus less N2O accumulation, as demonstrated when the corresponding isolate was inoculated into the studied soils. Therefore, the different phenotypes of N2O metabolism of the distinct denitrifiers predominantly colonized the two soils, causing differing N2O accumulation. This knowledge would help to develop a strategy for mitigating N2O emissions in agricultural soils by regulating the phenotypes of N2O metabolism.


Asunto(s)
Óxido Nitroso , Suelo , Desnitrificación , Microbiología del Suelo , Bacterias/genética , Carbono , Nitrógeno , Productos Agrícolas
13.
Front Pharmacol ; 13: 1057829, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-36353498

RESUMEN

The tumor suppressor p53 is the central hub of a molecular network, which controls cell proliferation and death, and also plays an important role in the occurrence and development of liver fibrosis. The abundant post-translational processing and modification endow the functional diversity of p53. Considering the relationship between p53 and liver fibrosis, drug intervention targeting p53 or management of p53 regulation might be effective strategies to treat liver fibrosis. Here, we systematically discuss the regulation of p53 in different liver cells (hepatocytes, immune cells, HSCs, etc) and the role of p53 in the development of liver fibrosis, and propose possible interventions to prevent the pathogenic processes of liver fibrosis.

14.
Anal Chem ; 94(44): 15489-15498, 2022 11 08.
Artículo en Inglés | MEDLINE | ID: mdl-36280344

RESUMEN

DNA methylation (5-methylcytosine, 5mC) is the most prevalent epigenetic modification that is predominantly found in CG dinucleotides in mammalian genomes. In-depth investigation of the functions of 5mC heavily relies on the quantitative measurement of 5mC at single-base resolution in genomes. Here, we proposed a methyltransferase-directed labeling with APOBEC3A (A3A) deamination sequencing (MLAD-seq) method for the single-base resolution and quantitative detection of 5mC in DNA. In MLAD-seq, a mutant of DNA methyltransferase, M.MpeI-N374K, is utilized to selectively transfer a carboxymethyl group to the 5 position of cytosine in the CG dinucleotide to form 5-carboxymethylcytosine (5camC) using carboxy-S-adenosyl-l-methionine (caSAM) as the cofactor. After A3A treatment, 5camC is resistant to the deamination and base pairs with guanine. Thus, the cytosines in CG sites are read as C in sequencing. On the contrary, the methyl group in 5mC inhibits its carboxymethylcytosine by M.MpeI-N374K and therefore is readily deaminated by A3A to produce thymine that pairs with adenine and is read as T in sequencing. The differential readouts from C and 5mC in the MLAD-seq enable the single-base resolution mapping of 5mC in CG sites in DNA. With the developed MLAD-seq method, we observed the hypermethylation in the promoter region of retinoic acid receptor ß (RARB) gene from human nonsmall cell lung tumor tissue. Compared to harsh reaction conditions in bisulfite sequencing that could lead to significant degradation of DNA, the whole procedure of MLAD-seq is carried out under mild conditions, which will avoid DNA damage. Thus, MLAD-seq is more suitable in the scenario where only limited input DNA is available. Taken together, the MLAD-seq offers a valuable tool for bisulfite-free, single-base resolution and quantitative detection of 5mC in limited DNA.


Asunto(s)
5-Metilcitosina , Metiltransferasas , Animales , Humanos , Desaminación , Análisis de Secuencia de ADN/métodos , Sulfitos , Epigénesis Genética , ADN/genética , Citosina , Metilación de ADN , Mamíferos
15.
Accid Anal Prev ; 173: 106721, 2022 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-35659647

RESUMEN

Understanding the relationship between social vulnerability and traffic crashes is a cornerstone for promoting social justice in transportation planning and policymaking. However, few studies have examined the disparities in traffic crashes by systemically considering the influence of social vulnerability via spatial analysis approaches. This study puts forward a new approach to assess the inequity in transportation safety by spatially examining the relationships between crash risks and the social vulnerability index (SVI) established by the Centers for Disease Control and Prevention (CDC). We performed spatial autocorrelation analyses to identify the clusters of high-risk and high-vulnerable census tracts in Texas. Meanwhile, we innovatively applied the Multiscale Geographically Weighted Regression model (MGWR) to assess the impacts of CDC SVI on crash risks spatially and statistically. The results demonstrate that the crash rate and the social vulnerability are significantly correlated in the highly urbanized regions as well as the southern border along the Rio Grande in Texas. The MGWR results indicate the minority status of census tracts is strongly correlated with overall crashes in north-central and northeastern Texas, and the socioeconomic status is tightly correlated with fatal crashes across Texas. The outcomes from this study have significant implications for transportation planning and policymaking.


Asunto(s)
Accidentes de Tránsito , Vulnerabilidad Social , Humanos , Análisis Espacial , Regresión Espacial , Texas/epidemiología
16.
Front Pharmacol ; 13: 833414, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35721143

RESUMEN

Huazhi-Rougan (HZRG) formula is a Traditional Chinese medicine prescription, and has been widely used to treat non-alcoholic fatty liver disease (NAFLD) and its progressive form non-alcoholic steatohepatitis (NASH). However, the anti-NASH effects and the underlying mechanisms of HZRG have not yet been characterized. Here we showed that 4-week HZRG treatment alleviated methionine-choline-deficiency (MCD) diet-induced NASH in C57BL/6J mice, as evidenced by the improvement of hepatic steatosis and inflammation, as well as the decrease of serum levels of alanine and aspartate transaminases. Fecal 16S rDNA sequencing indicated that HZRG reduced the enrichment of pathogenic bacteria and increased the abundance of bacteria gena that are involved in bile acid (BA) conversation. The alteration of fecal and serum BA profile suggested that HZRG enhanced fecal BA excretion, and reduced the reabsorption of toxic secondary BA species (LCA, DCA, HCA). We further analyzed the BA receptors and transporters, and found that HZRG inhibited the expression of ileal bile acid transporter, and organic solute transporter subunit ß, and increased the expression of intestinal tight junction proteins (ZO-1, Occludin, Claudin-2). The modulation of gut dysbiosis and BA profile, as well as the improvement of the intestinal environment, may contribute to the decrease of the p-65 subunit of NF-κB phosphorylation, liver F4/80 positive macrophages, inflammatory cytokine IL-1ß and TNF-α expression. In conclusion, HZRG treatment enhances fecal BA excretion via inhibiting BA transporters, modulates BA profiles, gut dysbiosis as well as the intestinal environment, thus contributing to the beneficial effect of HZRG on NASH mice.

17.
Adv Mater ; 34(34): e2202380, 2022 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-35413141

RESUMEN

Electrochemical capacitors (ECs), including electrical-double-layer capacitors and pseudocapacitors, feature high power densities but low energy densities. To improve the energy densities of ECs, redox electrolyte-enhanced ECs (R-ECs) or supercapbatteries are designed through employing confined soluble redox electrolytes and porous electrodes. In R-ECs the energy storage is based on diffusion-controlled faradaic processes of confined redox electrolytes at the surface of a porous electrode, which thus take the merits of high power densities of ECs and high energy densities of batteries. In the past few years, there has been great progress in the development of this energy storage technology, particularly in the design and synthesis of novel redox electrolytes and porous electrodes, as well as the configurations of new devices. Herein, a full-screen picture of the fundamentals and the state-of-art progress of R-ECs are given together with a discussion and outlines about the challenges and future perspectives of R-ECs. The strategies to improve the performance of R-ECs are highlighted from the aspects of their capacitances and capacitance retention, power densities, and energy densities. The insight into the philosophies behind these strategies will be favorable to promote the R-EC technology toward practical applications of supercapacitors in different fields.

18.
Biomed Pharmacother ; 149: 112825, 2022 May.
Artículo en Inglés | MEDLINE | ID: mdl-35305348

RESUMEN

Vitamin D deficiency is a common phenomenon in non-alcoholic fatty liver disease (NAFLD) and the progressive non-alcoholic steatohepatitis (NASH). Jiangzhi Granule (JZG) formula is a Traditional Chinese medicine prescription, and has been found effective against NAFLD/NASH. Here we showed that vitamin D deficiency could accelerate NASH development, and reduce vitamin D receptor (VDR) expression. JZG treatment alleviated high-fat vitamin D deficient (HF-VDD) diet-induced NASH in C57BL/6 J mice, and up-regulated both the liver and intestinal VDR expression independent of 1,25-dihydroxy-vitamin D3 level. We analyzed the fecal BA profile using liquid chromatography coupled with triple quadrupole mass spectrometry (UPLC-TQMS) -based metabolomics, and found that JZG modulated fecal BA profile, predominantly increased the ratio of secondary BA species, as well as the expression of tight junction proteins Zona occludens 1(ZO-1) and occludin in the colon. In vitro experiment further confirmed the representative secondary BA species lithocholic acid (LCA) and keto-LCA upregulated the expression of and ZO-1 through VDR in LPS-stressed Caco-2 cells. Our results identified the endogenous VDR activation by JZG through modulating BA species in vitamin D deficiency-related NASH mice, thus providing evidence for the clinical application of JZG in treating NASH.


Asunto(s)
Enfermedad del Hígado Graso no Alcohólico , Deficiencia de Vitamina D , Animales , Ácidos y Sales Biliares/metabolismo , Células CACO-2 , Dieta Alta en Grasa/efectos adversos , Modelos Animales de Enfermedad , Medicamentos Herbarios Chinos , Humanos , Hígado , Ratones , Ratones Endogámicos C57BL , Enfermedad del Hígado Graso no Alcohólico/metabolismo , Vitamina D/farmacología , Deficiencia de Vitamina D/metabolismo
19.
Nat Prod Res ; 36(19): 5032-5038, 2022 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-33949265

RESUMEN

The first investigation of chemical composition in seed kernels of Caesalpinia cucullata Roxb. resulted in the separation of four new cassane diterpenes, including three furanoditerpenes (1, 2 and 4) and one tricyclic type (3). It was the first found cassane diterpenoids from this plant. Their gross structures were elucidated by means of comprehensive spectroscopic analysis (UV, IR, NMR, HRESIMS) as well as electronic circular dichroism (ECD) calculation. The compound 1 possess a rare isomerized dihydrofuran ring in structure framework. In bioassay, compounds 1-4 exhibited moderate anti-inflammatory activity by inhibiting production of NO in LPS-induced RAW 264.7 cells.


Asunto(s)
Caesalpinia , Diterpenos , Antiinflamatorios/análisis , Antiinflamatorios/farmacología , Caesalpinia/química , Diterpenos/química , Lipopolisacáridos/farmacología , Estructura Molecular , Semillas/química
20.
Front Pharmacol ; 12: 783393, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34867414

RESUMEN

Fructose, especially industrial fructose (sucrose and high fructose corn syrup) is commonly used in all kinds of beverages and processed foods. Liver is the primary organ for fructose metabolism, recent studies suggest that excessive fructose intake is a driving force in non-alcoholic fatty liver disease (NAFLD). Dietary fructose metabolism begins at the intestine, along with its metabolites, may influence gut barrier and microbiota community, and contribute to increased nutrient absorption and lipogenic substrates overflow to the liver. Overwhelming fructose and the gut microbiota-derived fructose metabolites (e.g., acetate, butyric acid, butyrate and propionate) trigger the de novo lipogenesis in the liver, and result in lipid accumulation and hepatic steatosis. Fructose also reprograms the metabolic phenotype of liver cells (hepatocytes, macrophages, NK cells, etc.), and induces the occurrence of inflammation in the liver. Besides, there is endogenous fructose production that expands the fructose pool. Considering the close association of fructose metabolism and NAFLD, the drug development that focuses on blocking the absorption and metabolism of fructose might be promising strategies for NAFLD. Here we provide a systematic discussion of the underlying mechanisms of dietary fructose in contributing to the development and progression of NAFLD, and suggest the possible targets to prevent the pathogenetic process.

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